# Table of Contents

## In addition to this wiki, visit [www.XROMM.org](http://www.xromm.org) for general information about XROMM, the [Bitbucket XMALab wiki](https://bitbucket.org/xromm/xmalab/wiki/Home) for XMALab User Manual, the [Bitbucket MayaTools wiki](https://bitbucket.org/xromm/xromm_mayatools/wiki/Home) for descriptions of each tool in the MayaTools Scripts. For XROMM data management, see the [GitBook XMAPortal User Manual](https://gitbook.brown.edu/xromm/xromm-xmaportal-user-manual). <a href="#tableofcontents-visitwww.xromm.orgforgeneralinformationaboutxromm.seebitbucketxmalabwikiforxmalabuse" id="tableofcontents-visitwww.xromm.orgforgeneralinformationaboutxromm.seebitbucketxmalabwikiforxmalabuse"></a>

## Getting Started

* [Introduction](https://gitbook.brown.edu/xromm/xromm-introduction-to-xromm)
* [Tutorial for XMALab with example data](http://xmaportal.org/sandbox/larequest.php?request=explorePublicStudy\&StudyID=49\&instit=SANDBOX1)

## Downloads and Installation

* Download and configure [Maya](https://www.autodesk.com/education/free-software/maya)
* **To download XROMM MayaTools Scripts, see** [**Bitbucket MayaTools**](https://bitbucket.org/xromm/xromm_mayatools/src/master/) **for instructions**![](https://3579941541-files.gitbook.io/~/files/v0/b/gitbook-legacy-files/o/assets%2Fxromm%2F-M-QHEowdmb0lV4cB-0E%2F-M-QIYVChL-fg6a-oKTW%2Fgrey_arrow_down.png?generation=1581006094674728\&alt=media)Distortion Correction
* Use [XMALab](https://bitbucket.org/xromm/xmalab/) software for Undistortion, Calibration and Marker tracking. See [Bitbucket XMALab wiki](https://bitbucket.org/xromm/xmalab/wiki/Home) for instructions.

## Model Generation

The OsiriX open source project has been taken over by [Horos Project](https://www.horosproject.org) consortium. Free 64-bit version from <https://www.horosproject.org>.

* [Creating 3D models using Amira software](https://gitbook.brown.edu/xromm/model-generation/xromm-creating-3d-models-using-amira-software)
* [Creating 3D models with Horos](https://gitbook.brown.edu/xromm/model-generation/xromm-creating-3d-models-with-horos)
* [Creating 3D models with 3D Slicer](https://gitbook.brown.edu/xromm/model-generation/xromm-creating-3d-models-with-3d-slicer)
* [Cleaning up 3D models with Geomagic](https://gitbook.brown.edu/xromm/model-generation/xromm-cleaning-up-3d-models-with-geomagic)
* [Cleaning 3D models with MeshLab](https://gitbook.brown.edu/xromm/model-generation/xromm-cleaning-3d-models-with-meshlab)
* [Measure CT Marker Coordinates in Maya](https://gitbook.brown.edu/xromm/model-generation/xromm-measure-ct-marker-coordinates-in-maya)

## Animate Bones and Markers

* [Importing mesh models into Maya from Horos](https://gitbook.brown.edu/xromm/animate-bones-and-markers/xromm-importing-mesh-models-into-maya-from-horos)
* [Animate Bones](https://gitbook.brown.edu/xromm/animate-bones-and-markers/xromm-animate-bones-in-maya)
* [Check animation](https://gitbook.brown.edu/xromm/animate-bones-and-markers/xromm-check-your-animation-with-mayacams)

## Maya Analysis and Visualization

* [Create Joint Coordinate System (JCS)](https://gitbook.brown.edu/xromm/maya-analysis-and-visualization/xromm-working-with-joint-coordinate-systems-jcs)
* [Measure and export distance between two points](https://gitbook.brown.edu/xromm/maya-analysis-and-visualization/xromm-measuring-and-exporting-the-distance-between-two-points)
* [Measure the XYZ Coordinates of a Point Over Time](https://gitbook.brown.edu/xromm/maya-analysis-and-visualization/xromm-measuring-xyz-coordinates-of-a-point-over-time)
* [Parent a Camera to a reference bone](https://gitbook.brown.edu/xromm/maya-analysis-and-visualization/xromm-parent-a-camera-to-a-reference-bone)
* [Calculate Relative Motion](https://gitbook.brown.edu/xromm/maya-analysis-and-visualization/xromm-relative-motion)

## Scientific Rotoscoping

* Use [XMALab](https://bitbucket.org/xromm/xmalab/) for exporting undistorted Trial images
* [X-Ray Cameras in Maya](https://gitbook.brown.edu/xromm/scientific-rotoscoping/xromm-recreate-x-ray-cameras-in-maya)
* [Importing mesh models into Maya from Horos](https://gitbook.brown.edu/xromm/animate-bones-and-markers/xromm-importing-mesh-models-into-maya-from-horos)
* [Scientific Rotoscoping](https://gitbook.brown.edu/xromm/scientific-rotoscoping/xromm-scientific-rotoscoping-in-maya)
* [Rotoscoping with one or two markers](https://gitbook.brown.edu/xromm/scientific-rotoscoping/xromm-animating-a-bone-with-one-or-two-markers)

## Tips and Tools

![(lightbulb)](https://3579941541-files.gitbook.io/~/files/v0/b/gitbook-legacy-files/o/assets%2Fxromm%2F-M-QHEowdmb0lV4cB-0E%2F-M-QIYVBH80yLrXCVYWK%2Flightbulb_on.png?generation=1581006094682754\&alt=media) Note: Regular Users of the wiki, please add any pages you use regularly

* [Open Newer Maya Files](https://gitbook.brown.edu/xromm/tips-and-tools/xromm-open-maya-files-from-a-newer-version-with-older-versions)
* [Precision testing using frozen cadavers](https://gitbook.brown.edu/xromm/tips-and-tools/xromm-precision-testing-using-frozen-cadavers)
* [Import XYZ points into Maya](https://gitbook.brown.edu/xromm/tips-and-tools/xromm-import-xyz-points-into-maya)

## XMAPortal User Manual

* [Getting Started with the XMAPortal](https://gitbook.brown.edu/xromm/xromm-xmaportal-user-manual/xromm-getting-started-with-xmaportal)
* "[Sandbox](http://xmaportal.org/sandbox/)" for practicing and testing
* [Data Organization](https://gitbook.brown.edu/xromm/xromm-xmaportal-user-manual/xromm-data-organization)
* [Metadata Pool](https://gitbook.brown.edu/xromm/xromm-xmaportal-user-manual/xromm-metadata-pool)
* [Create a New Study](https://gitbook.brown.edu/xromm/xromm-xmaportal-user-manual/xromm-how-to-create-a-new-study)
* [Modify Study Metadata](https://gitbook.brown.edu/xromm/xromm-xmaportal-user-manual/xromm-how-to-modify-study-metadata)
* [Give access or revoke access to see your study](https://gitbook.brown.edu/xromm/xromm-xmaportal-user-manual/xromm-how-to-give-access-or-revoke-access-to-see-your-study)
* [Create Trials](https://gitbook.brown.edu/xromm/xromm-xmaportal-user-manual/xromm-how-to-create-trials)
* [Edit an existing trial](https://gitbook.brown.edu/xromm/xromm-xmaportal-user-manual/xromm-how-to-edit-an-existing-trial)
* [Upload files](https://gitbook.brown.edu/xromm/xromm-xmaportal-user-manual/xromm-how-to-upload-files)
* [Hide Files](https://gitbook.brown.edu/xromm/xromm-xmaportal-user-manual/xromm-hide-files)

| Key         | ctx                  |
| ----------- | -------------------- |
| Name        | XROMM                |
| Description |                      |
| Created by  | admin (Aug 06, 2007) |
